Smith Waterman Sequence Alignment

Insert the Strings you would like to align in the boxes below. Strings can be DNA, protein, or just PLAIN TEXT!! about...

Insert String 1 here:


Insert String 2 here:


Select a Data Type


Select an Output Type


Select a matrix (proteins only)


Gap Open Penalty:
Gap Extension Penalty:
Match (non protein only):
Miss-Match (non protein only):