Date

Presenter

Topic

08/28/13

Yuxiang

Correcting Bias in Statistical Tests for Network Classifier Evaluation

09/04/13

Sujun

Improving phosphopeptide identification in shotgun proteomics by supervised filtering of peptide-spectrum matches

09/11/13

Sujun

Practice talk for ACM BCB

09/18/13

Pedja/Sujun

 Tutorial on Protein function Prediction/Practice talk for ACM BCB

09/25/13

    No meeting

10/02/13

Chao

 Paper presentation: Critical assessment of proteome-wide label free absolute abundance estimation strategies

10/09/13

Chao/Pedja

Paper presentation:IDPQuantify: Combining Precursor Intensity with Spectral Counts for Protein and Peptide Quantification / Tutorial on Protein Function Prediction

10/16/13

Pedja

 Tutorial on Protein Function Prediction (Methods)

10/23/13

 Journal club

10/30/13

Jose

 Origin and evolution of protein fold design

11/06/13

Kym

 Genetic penetrance

11/13/13

 Journal Club

11/20/13

Journal Club 

11/27/13

 Discussion on AUC evaluation using Bootstrapping

12/04/13

Rodrigo

Paper presentation: Comparative Proteomics Reveals a Significant Bias Toward Alternative Protein Isoforms with Conserved Structure and Function/Discovery and Mass Spectrometric Analysis of Novel Splice-junction Peptides Using RNA-Seq

12/11/13

Yuxiang

Introduction to deep learning 

12/18/13

Prof. Mihai Ciucu

Perfect matching problem and simulation